The study assessed the overall soil characteristics of grasslands on Qilian Mountains and rated the soil nutrient status with classification standard of the second national soil survey of China. Nemerow index method was used to evaluate the soil fertility of different grassland types. GIS was used to analyze the spatial distribution of the soil nutrients and provided a database for the grassland’s ecological protection and restoration. The study graded the soil organic matter (SOM), total N, and available K at level 2 (high) or above for most regions, available soil-P at level 4, while the soil bulk density, total porosity and pH were 0.77–1.32 g cm−3, 35.36–58.83% and 7.63–8.54, respectively. The rank of comprehensive soil fertility index was temperate steppe (TS) > alpine meadow (AM) > alpine steppe (AS) >upland meadow (UM) >alpine desert (AD)> lowland meadow (LM)> temperate desert steppe (TDS)> temperate desert (TD). The areas with high, medium and low soil fertility accounted for 63.19%, 34.24% and 2.57% of the total grassland area. Soil fertility of different grassland types had different main limiting factors, for instance, the pH, total N and SOM were the main factors limiting soil fertility in LM, while pH and available P were the main factors limiting soil fertility in UM, AM, TS and AS. In summary, the grassland soil fertility was generally at the mid-upper level, and the main limiting factors were found in the different types of the grasslands and their spatial distributions were figured out. Our findings also indicated that the typical grasslands and meadows may require phosphorus application, while for desert grasslands, both nitrogen and phosphorus were required to improve their comprehensive soil fertility and grassland productivity. Copyright 2021 Li et al.